LncRNAs with NONCODEv5 database (Fang et al 18), and the standard for sequence similarity was defined with evalue ofComprehensive largescale sequencing and bioinformatics analyses have uncovered a myriad of cancerassociated long noncoding RNAs (lncRNAs) Aberrant expression of lncRNAs is associated with epigenetic reprogramming during tumor development and progression, mainly due to their ability to interact with DNA, RNA, or proteins to regulate gene expression LncRNAs participate inNov 17, 17 · NONCODEV5 – a comprehensive annotation database for long noncoding RNAs November 17, 17 Leave a comment 4,725 Views NONCODE is a systematic database that is dedicated to presenting the most complete collection and annotation of noncoding RNAs (ncRNAs), especially long noncoding RNAs (lncRNAs) Since NONCODE 16 was released two
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Noncodev5-Cording to NONCODEv5, >96,000 human lncRNA genes have been identified to date 12;Which has unknown strand, '' Can it be a problem?
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Copy link Owner alexdobin commented Mar , 18 Hi Hiroko, It looks like the "gene_id" and "transcript_id" are always the same in this GTFDec 30, · To investigate the lncRNAs captured by SCANseq, we extracted reads mapping to intergenic regions and then mapped the reads to the NONCODEv5 lncRNA database It is interesting that the intergenic reads were dramatically increased at the 2cell stage and then decreased along with the developmental stages This indicates de novo expression ofThe following browsers are recommended for the best experience IE 110 Chrome 43 Firefox 38 huaweicloud
Apr 16, 21 · Author summary Transcript stability is important for many biological processes However, little is known about the features related to human lncRNA stability Through quantitative analysis between the halflives of lncRNAs (mRNAs) and various factors, we found a nonlinear relationship between the halflives of lncRNAs (mRNAs) and the related factors and theirAmple, according to the latest release of NONCODEv5, human lncRNA pools have 172, 216 transcripts encoded by 96, 308 noncoding genes (Fang et al, 18) Although American scientists first observed circular forms of RNA using electron microscopic in eukaryotic cells (Hsu and CocaPrados, 1979), China is now leading the circRNA research DrsNONCODEV5 a comprehensive annotation database for long noncoding RNAs SS Fang, LL Zhang, JC Guo, YW Niu, Y Wu, H Li, LH Zhao, XY Li, Nucleic acids research 46 (D1), D308D314 , 18
NONCODEV5 a comprehensive annotation database for long noncoding RNAs ShuangSang Fang#, LiLi Zhang#, JinCheng Guo, YiWei Niu, Yang Wu, Hui Li, LianHe Zhao, XiYuan Li, XueYi Teng, XianHui Sun, Liang Sun, Michael Q Zhang, RunSheng Chen, Yi Zhao PDF LinkTable 2 GraphBased Analysis of RNA Secondary Structure Similarity ComparisonApr 24, 18 · mRNAlike long noncoding RNAs (lncRNAs) are a significant component of mammalian transcriptomes, although most are expressed only at low levels, with high tissuespecificity and/or at specific developmental stages Thus, in many cases lncRNA detection by RNAsequencing (RNAseq) is compromised by stochastic sampling To account for this and create a
Non Coding Rna Sequences From The Rfam And Noncodev5 Databases Download Scientific Diagram
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Jan 16, · We found that MSTRG is 99% homologous to NONNATT from NONCODEv5 database MSTRG is mainly expressed in the nucleus of BRL by FISH (fluorescence in situ hybridization), soMar 24, · Fang S, Zhang L, Guo J, Niu Y, Wu Y, Li H, et al NONCODEV5 a comprehensive annotation database for long noncoding RNAs Nucleic Acids Res 18;46(D1)D308–d314 Article CAS Google Scholar 22 Kin T, Ono Y Idiographica a generalpurpose web application to build idiograms ondemand for human, mouse and ratNONCODEV5 a comprehensive annotation database for long noncoding RNAs Fang S,Zhang L,Guo J,Niu Y,Wu Y,Li H,Zhao L,Li X,Teng X,Sun X,Sun L,Zhang MQ,Chen R,Zhao Y Nucleic Acids Res 17 View Paper (PubMed) View Publication
The Nuclear Hypoxia Regulated Nlucat1 Long Non Coding Rna Contributes To An Aggressive Phenotype In Lung Adenocarcinoma Through Regulation Of Oxidative Stress Oncogene
Lncrna Comparison With The Noncodev5 Database Based On Sequence Similarity Download Table
Nov 17, 17 · NONCODEV5 – a comprehensive annotation database for long noncoding RNAs Posted by lncRNA Administrator in Database November 17, 17 0 4,718 Views NONCODE is a systematic database that is dedicated to presenting the most complete collection and annotation of noncoding RNAs (ncRNAs), especially long noncoding RNAs (lncRNAs)Fang S, Zhang L, Guo J, et al NONCODEV5 a comprehensive annotation database for long noncoding RNAs Nucleic Acids Res 18;46D Carver TJ, Mullan LJ JAE Jemboss Alignment Editor Appl Bioinformatics 05; Casper J, Zweig AS, Villarreal C, et al The UCSC Genome Browser database 18 updateSep 01, · This long intergenic noncoding RNA had no obvious annotation hits after examining its sequence using tools available with the NONCODEv5 , lncRNAdb , or LNCipedia 50 databases Our PhyloCSF analysis 51 yielded a score of − for this candidate lncRNA, indicating its noncoding characteristics (Additional file 1 Figure S2c)
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NONCODEV5 a comprehensive annotation database for long noncoding RNAs Nucleic Acids Res 18;This is an Open data distributed under the terms of the Creative Commons Attribution NonCommercial License, which permits unrestricted noncommercial use, distribution, and reproduction in any medium, provided the original work is properly citedSep 18, 18 · LncRNAs were also compared to the NONCODEv5 database using sequence similarity Only 777% of predicted chicken lncRNAs and 557% of cattle lncRNAs had sequences similar to those in the NONCODE database, defined as having at least 50% sequence identity and the alignment covering at least 50% of the predicted lncRNA
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Chr13 NONCODEv5 exon 0 gene_id "NONHSAT";Up to now, NONCODE not only provide basic services like Blast and Genome Browser, but also provide an ID conversion tool and an online pipeline for identification of lncRNAs In the NONCODEv5, we add the information of lncRNA and disease, exosome expression profile of lncRNA and lncRNA Secondary StructureJan 11, 19 · Long noncoding RNAs (lncRNAs) are important component of mammalian genomes, where their numbers are even larger than that of proteincoding genes For example, human (Homo sapiens) (96,308 vs ,376) and mouse (Mus musculus) (87,774 vs 22,630) have more lncRNA genes than proteincoding genes in the NONCODEv5 database Recently, mammalian lncRNAs
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